PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016461997.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 463aa    MW: 52400.2 Da    PI: 6.7794
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016461997.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.16.7e-1826116199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv+   d + +++l++p  fa++ ++   ++++  led+sg++W+v++  + ++g+  +++GW +F +++gL+ gDf+vF++++ + f   v+
  XP_016461997.1  26 FFKVM--IDKSFRKILYFPPMFARSVSHL--TDQETYLEDSSGQRWRVTV--CDHKGSLAIRQGWPKFSSEHGLNLGDFLVFYYVEGQYF--IVQ 112
                     89999..88999999**********9766..4568***************..*******************************9876666..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +++k
  XP_016461997.1 113 IYDK 116
                     9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-2023119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-2223119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.0724117IPR003340B3 DNA binding domain
CDDcd100175.54E-1825115No hitNo description
PfamPF023621.1E-1526116IPR003340B3 DNA binding domain
SMARTSM010191.3E-1326117IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MGCEKEASDE CKQNSLLFHG KRVSSFFKVM IDKSFRKILY FPPMFARSVS HLTDQETYLE  60
DSSGQRWRVT VCDHKGSLAI RQGWPKFSSE HGLNLGDFLV FYYVEGQYFI VQIYDKSGCQ  120
KIKFYSDFCK GKRKTRTYPE KTSQVKLLQT TDINPVNKRS KISAVSESEK VTCKAHITKF  180
ATNIDADTGK GQLVYPAVYV DESFCMVDRD AQYHQGDDRL CLHLSSFEMP ASKPLAEGTS  240
SLLKADDGNS NHVETNLRSQ TEPNLVVVAD YLNSEELLPK FEAEITGSDM VPAEDIPLLS  300
QKDQNDCPSG IISSSFLKPA ANVNKNDDVS NVTKYQNHWM STDTTRETRL VKKEFEETAA  360
KAYYPARAIS ARETRLVKKE FEETAAKAYY PARAISDSGK EPANGNEKVI KSEPADSGDM  420
PSLTAVSYSC LLEVDGRDFL ELPESWRKYL MKKAKLERWI IFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461997.10.0PREDICTED: uncharacterized protein LOC107785253 isoform X6
TrEMBLM1B7Z91e-172M1B7Z9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000392491e-172(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.16e-11B3 family protein